BtaEX6086392 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004908 | CHRNE
Description
Bos taurus cholinergic receptor, nicotinic, epsilon (muscle) (CHRNE), mRNA. [Source:RefSeq mRNA;Acc:NM_174272]
Coordinates
chr19:27122156-27122724:+
Coord C1 exon
chr19:27122156-27122270
Coord A exon
chr19:27122347-27122533
Coord C2 exon
chr19:27122618-27122724
Length
187 bp
Sequences
Splice sites
3' ss Seq
CCCGCCCCCCCCCCCCCCAGGTG
3' ss Score
12.91
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
GTACCTCATTTTCGTCATGGTGGTCGCCACACTCATTGTCATGAATTGCGTCATCGTGCTCAACGTGTCATTGCGGACGCCCACCACTCACGCCATGTCCCCGCGACTGCGCTAC
Seq A exon
GTGTTGCTGGAGCTGCTACCCCAGCTCCTGGGCTCCGGCGCGCCCCCCGAGATCCCCCGAGCTGCCTCGCCCCCAAGGAGGGCGTCGTCCCTGGGCCTCCTGCTCCGCGCGGAGGAGCTGATACTGAAAAAGCCGCGGAGCGAACTGGTATTTGAGCAGCAGAGGCACCGGCACGGAACCTGGACGG
Seq C2 exon
CTACCCTCTGCCAGAACCTGGGCGCTGCCGCCCCCGAGATCCGCTGCTGTGTGGATGCCGTGAACTTCGTGGCTTCAAGCACTCGGGACCAGGAGGCCACTGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004908-'12-14,'12-13,13-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.063 C2=0.056
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(16.7=100)
A:
PF0293211=Neur_chan_memb=FE(27.2=100)
C2:
PF0293211=Neur_chan_memb=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTCATTTTCGTCATGGTGGT
R:
CCAGTGGCCTCCTGGTCC
Band lengths:
218-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]