MmuEX7034416 @ mm10
Exon Skipping
Gene
ENSMUSG00000014609 | Chrne
Description
cholinergic receptor, nicotinic, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:87894]
Coordinates
chr11:70615208-70615775:-
Coord C1 exon
chr11:70615661-70615775
Coord A exon
chr11:70615400-70615586
Coord C2 exon
chr11:70615208-70615314
Length
187 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGCCCCGGCTGCAGATT
3' ss Score
7.61
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
GTATCTTATATTCGTCATGGTGGTTGCCACGCTCATTGTCATGAATTGCGTCATCGTGCTCAACGTATCTTTGAGGACGCCAACGACTCATGCTACATCCCCTCGGCTGCGCCAG
Seq A exon
ATTTTATTAGAGCTGCTGCCGCGTCTCCTGGGCTCGAGCCCACCCCCAGAGGATCCCCGAACTGCCTCACCAGCGAGGCGTGCCTCGTCTGTGGGCATTCTGCTCAGAGCGGAGGAGCTCATCTTGAAAAAGCCGCGGAGCGAACTCGTGTTTGAGGGTCAGAGGCATCGGCACGGAACTTGGACCG
Seq C2 exon
CAGCCCTCTGCCAGAACCTGGGTGCTGCAGCCCCAGAAATCCGCTGCTGTGTGGATGCTGTGAACTTTGTGGCTGAGAGCACAAGAGACCAGGAAGCCACTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014609-'11-16,'11-12,12-16=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.175 C2=0.055
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(16.6=100)
A:
PF0293211=Neur_chan_memb=FE(27.1=100)
C2:
PF0293211=Neur_chan_memb=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTATATTCGTCATGGTGGTTGCC
R:
CTCTCCAGTGGCTTCCTGGTC
Band lengths:
218-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types