BtaEX6087042 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021151 | MYH10
Description
Bos taurus myosin, heavy chain 10, non-muscle (MYH10), mRNA. [Source:RefSeq mRNA;Acc:NM_174834]
Coordinates
chr19:28697473-28698875:-
Coord C1 exon
chr19:28698663-28698875
Coord A exon
chr19:28698204-28698348
Coord C2 exon
chr19:28697473-28697679
Length
145 bp
Sequences
Splice sites
3' ss Seq
AGCTAATTTAATGTCTGTAGTAC
3' ss Score
1.31
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
Exon sequences
Seq C1 exon
GGGTGACGACGAGACGCTACACAAGAACAACGCACTAAAAGTCGTGCGAGAGCTGCAGGCCCAGATCGCCGAGCTGCAGGAGGACTTTGAATCTGAGAAGGCCTCGCGGAACAAAGCAGAGAAGCAGAAGAGGGACTTGAGTGAGGAGCTGGAGGCACTCAAGACGGAGCTGGAGGACACGCTGGACACCACGGCGGCCCAGCAGGAACTGCG
Seq A exon
TACAAAACGAGAACAAGAAGTGGCGGAGCTGAAGAAGGCTCTCGAGGAGGAAACGAAGAGCCACGAGGCTCAGATCCAGGACATGAGGCAGAGGCATGCGACCGCCTTGGAGGAGCTGTCGGAGCAGCTGGAGCAGGCCAAGAGG
Seq C2 exon
TTCAAAGCAAATCTGGAAAAGAACAAGCAGGGCCTGGAGACAGACAACAAGGAGCTGGCGTGCGAGGTCAAGGTGCTGCAGCAGGTCAAGGCTGAGTCCGAGCACAAGAGGAAGAAGCTGGACGCCCAGGTCCAGGAGCTCCACGCCAAGGTCTCAGAGGGAGACAGACTCAGGGTGGAGCTGGCAGAGAAAGCCAATAAGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021151-'43-40,'43-39,44-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.819 A=0.918 C2=0.522
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.3=100)
A:
PF0157614=Myosin_tail_1=FE(5.6=100)
C2:
PF0157614=Myosin_tail_1=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACGAGACGCTACACAAG
R:
AGGCCCTGCTTGTTCTTTTCC
Band lengths:
244-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]