RnoEX0056969 @ rn6
Exon Skipping
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55384708-55389712:+
Coord C1 exon
chr10:55384708-55384920
Coord A exon
chr10:55388547-55388691
Coord C2 exon
chr10:55389506-55389712
Length
145 bp
Sequences
Splice sites
3' ss Seq
AAAAAAAAAAATGTCTCTAGCAC
3' ss Score
1.5
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
AGGAGATGATGAGACGCTGCACAAGAATAATGCGCTTAAAGTTGCGCGGGAGCTGCAGGCCCAAATCGCCGAGCTCCAGGAAGACTTTGAGTCTGAAAAGGCTTCAAGGAACAAGGCTGAGAAACAAAAACGGGACCTGAGTGAGGAGCTGGAAGCTCTAAAGACAGAACTGGAGGACACCCTAGACACCACAGCAGCTCAGCAGGAACTCCG
Seq A exon
CACAAAGCGGGAGCAGGAAGTAGCTGAGCTGAAGAAGGCTCTTGAGGATGAAACTAAGAACCACGAAGCTCAGATCCAGGACATGAGACAGAGGCACGCCACGGCACTGGAGGAACTCTCTGAGCAACTGGAACAGGCTAAGAGG
Seq C2 exon
TTCAAAGCCAATCTGGAGAAGAACAAACAGGGCCTGGAGACGGACAACAAGGAGCTGGCGTGTGAGGTGAAGGTGCTGCAGCAAGTCAAGGCTGAGTCAGAGCACAAGAGGAAGAAGCTCGATGCCCAGGTCCAGGAGCTCCACGCCAAGGTGTCAGAAGGTGACAGGCTCAGGGTAGAACTGGCCGAGAAAGCAAACAAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886-'41-41,'41-40,43-41
Average complexity
S
Mappability confidence:
89%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=0.939 C2=0.609
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.3=100)
A:
PF0157614=Myosin_tail_1=FE(5.6=100)
C2:
PF0157614=Myosin_tail_1=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGAACTGGAGGACACCC
R:
GCTTTCTCGGCCAGTTCTACC
Band lengths:
246-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]