HsaEX6020896 @ hg38
Exon Skipping
Gene
ENSG00000133026 | MYH10
Description
myosin heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:7568]
Coordinates
chr17:8499270-8504906:-
Coord C1 exon
chr17:8504694-8504906
Coord A exon
chr17:8500826-8500970
Coord C2 exon
chr17:8499270-8499476
Length
145 bp
Sequences
Splice sites
3' ss Seq
TAAAAAATGTCCTTCTCTAGTAC
3' ss Score
6.21
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
AGGTGATGATGAAACACTCCATAAGAACAATGCCCTTAAAGTTGTGCGAGAGCTACAAGCCCAAATTGCTGAACTTCAGGAAGACTTTGAATCCGAGAAGGCTTCACGGAACAAGGCCGAAAAGCAGAAAAGGGACTTGAGTGAGGAACTGGAAGCTCTGAAAACAGAGCTGGAGGACACGCTGGACACCACGGCAGCCCAGCAGGAACTACG
Seq A exon
TACAAAACGTGAACAAGAAGTGGCAGAGCTGAAGAAAGCTCTTGAGGAGGAAACTAAGAACCATGAAGCTCAAATCCAGGACATGAGACAAAGACACGCAACAGCCCTGGAGGAGCTCTCAGAGCAGCTGGAACAGGCCAAGCGG
Seq C2 exon
TTCAAAGCAAATCTAGAGAAGAACAAGCAGGGCCTGGAGACAGATAACAAGGAGCTGGCGTGTGAGGTGAAGGTCCTGCAGCAGGTCAAGGCTGAGTCTGAGCACAAGAGGAAGAAGCTCGACGCGCAGGTCCAGGAGCTCCATGCCAAGGTCTCTGAAGGCGACAGGCTCAGGGTGGAGCTGGCGGAGAAAGCAAGTAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026-'81-70,'81-69,83-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.819 A=0.918 C2=0.493
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(27.2=100)
A:
PF0157614=Myosin_tail_1=FE(18.4=100)
C2:
PF0157614=Myosin_tail_1=FE(26.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAAGGCTTCACGGAACAA
R:
GCGTCGAGCTTCTTCCTCTTG
Band lengths:
245-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains