GgaEX6015815 @ galGal4
Exon Skipping
Gene
ENSGALG00000001183 | MYH10
Description
myosin-10 [Source:RefSeq peptide;Acc:NP_990805]
Coordinates
chr18:1713704-1715816:-
Coord C1 exon
chr18:1715604-1715816
Coord A exon
chr18:1715336-1715480
Coord C2 exon
chr18:1713704-1713910
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATAACTGTTGCTTGCTCTAGGAC
3' ss Score
9.28
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
AGGTGATGAAGAAGCAGTTCAGAAAAACAATGCACTTAAAGTGATAAGAGAGTTGCAGGCCCAAATTGCAGAACTGCAGGAGGATCTTGAATCTGAGAAGGCATCACGCAACAAGGCAGAGAAGCAGAAAAGAGATTTAAGTGAAGAGTTGGAGGCTTTAAAAACTGAACTGGAAGATACCTTGGATACCACTGCAGCACAGCAAGAGCTGAG
Seq A exon
GACAAAACGTGAGCAGGAAGTGGCTGAGCTGAAGAAAGCAATTGAAGAGGAAACCAAGAACCATGAAGCACAGATCCAGGAGATCAGGCAGAGGCATGCTACTGCCCTGGAAGAGCTCTCTGAACAACTTGAACAGGCCAAAAGG
Seq C2 exon
TTCAAAGCAAACCTTGAAAAAAACAAGCAAGGCCTGGAGTCTGACAACAAGGAGTTGGCCTGTGAAGTGAAGGTGTTGCAGCAGGTCAAGGCAGAGTCTGAGCATAAGAGGAAGAAGCTTGATGCTCAGGTACAAGAACTGACTGCTAAGGTCACAGAAGGCGAAAGACTGAGGGTGGAGCTGGCGGAGAAAGCTAACAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183-'45-50,'45-49,46-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=0.816 C2=0.415
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(12.1=100)
A:
PF0157614=Myosin_tail_1=FE(18.8=100)
C2:
PF0157614=Myosin_tail_1=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCCAAATTGCAGAACTG
R:
TTGACCTGCTGCAACACCTTC
Band lengths:
247-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]