DreEX6020217 @ danRer10
Exon Skipping
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7476103-7480047:+
Coord C1 exon
chr6:7476103-7476315
Coord A exon
chr6:7479537-7479681
Coord C2 exon
chr6:7479841-7480047
Length
145 bp
Sequences
Splice sites
3' ss Seq
AATGTGTCTCACCAATGAAGGAG
3' ss Score
4.42
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
AGGTGATGAGGAGGTCGCTCAGAAGAACAACGCCCTCAAGCAATTACGGGAGCTGCAGGCCCAGCTAGCTGAGCTGCAGGAGGATCTGGAGTCTGAGAAAGCAGCCAGAAACAAAGCAGAGAAGCTTAAGAGAGATCTGAGCGAGGAACTGGAAGCTCTTAAGACTGAGCTGGAAGACACGCTGGACACCACCGCTGCCCAGCAGGAGCTCAG
Seq A exon
GAGTAAGCGAGAGCAGGAGGTGGCGGAGCTGAAGAAGGCCATTGACGACGAGACGAGGAACCACGAGTCTCAGATCCAGGAGATGAGACAGAGGCACGGCACGGCACTGGAGGAGATCTCCGAGCAGCTGGAGCAGGCCAAGAGA
Seq C2 exon
GTCAAAGGAAATCTGGAGAAAAACAAACAGACTCTGGAGAGCGATAATAAGGAGCTGACCAATGAGGTGAAGAGTTTGCAGCAGGCCAAGTCTGAGTCCGAACACAAGAGAAAGAAACTGGAGGCTCAGCTGCAGGAGGTCATGGCCCGCTTCAGTGAGGGGGAGAAGGTTAAAGGAGAGCTGGCCGACCGTACCCACAAGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103-'35-33,'35-32,37-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.904 A=1.000 C2=0.957
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.3=100)
A:
PF0157614=Myosin_tail_1=FE(5.6=100)
C2:
PF0157614=Myosin_tail_1=FE(7.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGAGGATCTGGAGTCTG
R:
GTGTTCGGACTCAGACTTGGC
Band lengths:
244-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]