GgaEX6015815 @ galGal3
Exon Skipping
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1700731-1702843:-
Coord C1 exon
chr18:1702631-1702843
Coord A exon
chr18:1702363-1702507
Coord C2 exon
chr18:1700731-1700937
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATAACTGTTGCTTGCTCTAGGAC
3' ss Score
9.28
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
AGGTGATGAAGAAGCAGTTCAGAAAAACAATGCACTTAAAGTGATAAGAGAGTTGCAGGCCCAAATTGCAGAACTGCAGGAGGATCTTGAATCTGAGAAGGCATCACGCAACAAGGCAGAGAAGCAGAAAAGAGATTTAAGTGAAGAGTTGGAGGCTTTAAAAACTGAACTGGAAGATACCTTGGATACCACTGCAGCACAGCAAGAGCTGAG
Seq A exon
GACAAAACGTGAGCAGGAAGTGGCTGAGCTGAAGAAAGCAATTGAAGAGGAAACCAAGAACCATGAAGCACAGATCCAGGAGATCAGGCAGAGGCATGCTACTGCCCTGGAAGAGCTCTCTGAACAACTTGAACAGGCCAAAAGG
Seq C2 exon
TTCAAAGCAAACCTTGAAAAAAACAAGCAAGGCCTGGAGTCTGACAACAAGGAGTTGGCCTGTGAAGTGAAGGTGTTGCAGCAGGTCAAGGCAGAGTCTGAGCATAAGAGGAAGAAGCTTGATGCTCAGGTACAAGAACTGACTGCTAAGGTCACAGAAGGCGAAAGACTGAGGGTGGAGCTGGCGGAGAAAGCTAACAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183-'30-33,'30-32,31-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=0.816 C2=0.420
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.3=100)
A:
PF0157614=Myosin_tail_1=FE(5.6=100)
C2:
PF0157614=Myosin_tail_1=FE(7.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCCAAATTGCAGAACTG
R:
TTGACCTGCTGCAACACCTTC
Band lengths:
247-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]