BtaEX6087239 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31203787-31213120:+
Coord C1 exon
chr19:31203787-31203909
Coord A exon
chr19:31211938-31212131
Coord C2 exon
chr19:31212972-31213120
Length
194 bp
Sequences
Splice sites
3' ss Seq
GGTTCCCTGACCTTTTCCAGGCA
3' ss Score
6.69
5' ss Seq
GCGGTAGGG
5' ss Score
6.22
Exon sequences
Seq C1 exon
ATCCTCCTCATGAACCAGGAAGTGCGTGCGGCCGAGCTGGACTTCCTGCTTCGATCTCCAGCACAGACAGGAGTCACCAGTCCAGTGGAGTTCCTCTCCCATCAGGCCTGGGGTGGCATCAAG
Seq A exon
GCACTTTCATCAATGGAAGAATTCTGTAATCTGGATCGGGACATTGAGGGATCCACCAAAAGCTGGAAGAAGTTCGTGGAATCAGAATGTCCTGAGAAGGAAAAATTCCCCCAGGAGTGGAAGCACAAGACAGCCCTGCAGCGCCTCTGCATGATAAGAGTCCTGCGGCCGGACCGGATGACCTATGCCCTGCG
Seq C2 exon
AGATTTTATTGAGGAGAAGTTAGGAAGCAAGTATGTGGTGGGAAGAGCACTGGACTTTGCAGCCTCTTTTGAAGAATCAGGACCAGCCGCTCCCATGTTCTTCATCCTTTCTCCAGGGGTGGACCCACTGAAGGATGTGGAAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'82-93,'82-92,84-93=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(2.8=48.8)
A:
PF0302810=Dynein_heavy=FE(10.0=100)
C2:
PF0302810=Dynein_heavy=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAACCAGGAAGTGCGTG
R:
CACATCCTTCAGTGGGTCCAC
Band lengths:
255-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]