MmuEX6086236 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65870920-65880283:-
Coord C1 exon
chr11:65880161-65880283
Coord A exon
chr11:65874123-65874316
Coord C2 exon
chr11:65870920-65871068
Length
194 bp
Sequences
Splice sites
3' ss Seq
CATTCTCTGGCATTCTCTAGGCA
3' ss Score
7.96
5' ss Seq
GCGGTAGGA
5' ss Score
6.86
Exon sequences
Seq C1 exon
ATTCTCCTCGTGAACCAGGAAGTTAATGCAGCAGAGTTGGATTTCTTGCTTAGGGCTCCAGTACAGACAGGGACTCCCAGCCCAATGGAGTTCCTGTCCCACCAGGCCTGGGGAGGCATCAAG
Seq A exon
GCACTCTCATCAATGGAGGAATTCTGCAATCTGGACCGAGACATTGAAGGCTCTGCCAAGAGCTGGAAAAAGTTTGTGGAGTCAGAGTGTCCCGAGAAGGAGAAGTTTCCCCAGGAGTGGAAGAACAAGACAGCCCTGCAGCGCCTCTGCATGATGAGAGCCATGAGGCCTGACCGGATGACCTATGCCATGCG
Seq C2 exon
AGATTTTGTTGAGGAGAAGTTGGGAAGCAAATACGTGATGGGAAGAGCACTCGATTTTGTAACCTCATTTGAAGAGTCAGGACCAGCCACTCCCATGTTTTTCATCCTGTCTCCAGGGGTGGATCCACTGAAGGATGTGGAAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'70-79,'70-78,71-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(11.1=47.6)
A:
PF0302810=Dynein_heavy=FE(10.1=100)
C2:
PF0302810=Dynein_heavy=FE(27.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGAAGTTAATGCAGCAGA
R:
TCCACATCCTTCAGTGGATCCA
Band lengths:
251-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types