RnoEX6047746 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52385439-52395114:-
Coord C1 exon
chr10:52394992-52395114
Coord A exon
chr10:52388625-52388818
Coord C2 exon
chr10:52385439-52385587
Length
194 bp
Sequences
Splice sites
3' ss Seq
CATTCTCTGGCATTCTCTAGGCA
3' ss Score
7.96
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATTCTCCTCGTGAACCAGGAAGTCAATGCAGCAGAGTTGGACTTCTTGCTTCGGGCTCCAGTACAGGCAGGAACTCCCAGCCCAATGGAGTTCCTGTCCCACCAGGCCTGGGGAAGCATCAAG
Seq A exon
GCACTCTCATCCATGGAGGAATTCTGCAATCTGGATCGAGACATTGAAGGCTCTGCCAAGAGCTGGAAGAAGTTTGTGGAGTCAGAGTGTCCCGAGAAGGAGAAGTTTCCCCAGGATTGGAAGAACAAGACAGGCCTTCAGCGCCTCTGCATGATGAGAGCCATGAGACCTGACCGGATGACCTATGCCATGAG
Seq C2 exon
AGATTTTGTTGAGGAGAAGTTAGGAAGCAAATACGTGATGGGAAGACCACTGGATTTTGTAAGCTCATTTGAAGAGTCAGGACCAGCCACTCCCATGTTTTTCATCCTGTCTCCAGGGGTGGACCCACTGAAGGATGTGGAAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'84-82,'84-81,86-82=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(2.8=48.8)
A:
PF0302810=Dynein_heavy=FE(12.4=100)
C2:
PF0302810=Dynein_heavy=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGAAGTCAATGCAGCAG
R:
CACATCCTTCAGTGGGTCCAC
Band lengths:
249-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]