GgaEX7009421 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1153248-1169162:+
Coord C1 exon
chr18:1153248-1153370
Coord A exon
chr18:1164723-1164916
Coord C2 exon
chr18:1169014-1169162
Length
194 bp
Sequences
Splice sites
3' ss Seq
ACCTTCCTTGAATTTTCCAGGCC
3' ss Score
8.72
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
ATACTTCTGATGAGTAAAGAAATCAACGCAGTAGAACTGGATTTCCTGCTCAGATACCCAGCACAGCCCAGAGTCACAAGCCCTGTAGAGTTCCTGTCTAATCACTCCTGGGGAGGAATCAAG
Seq A exon
GCCCTCTCATCCATGGAGGAGTTCAGAAACCTGGATCGGGATATTGAGGGCTCTGCAAAACGGTGGAGGAAATTTGTTGAATCTGAGTGTCCTGAAAAGGAGAAGTTCCCCCAGGAATGGAAGAACAAGTCAGCTCTGCAGCGCCTGTGCATCATGAGGGCCATCCGGCCTGACCGCATGACCTACGCTGTCCG
Seq C2 exon
AGATTTTGTAGAAGAGAAGCTTGGCAGTAAATATGTGGCCGGGAGACCCCTGGACTTTGCAGCATCCTTTGAGGAATCGGGACCTGCAACCCCAATGTTTTTTATCCTGTCCCCAGGAGTTGACCCACTGAAGGATGTGGAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'56-62,'56-61,57-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(2.8=48.8)
A:
PF0302810=Dynein_heavy=FE(12.6=100)
C2:
PF0302810=Dynein_heavy=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACGCAGTAGAACTGGATTTCC
R:
TCCACATCCTTCAGTGGGTCA
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]