HsaEX6021119 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11797691-11809126:+
Coord C1 exon
chr17:11797691-11797813
Coord A exon
chr17:11806036-11806229
Coord C2 exon
chr17:11808978-11809126
Length
194 bp
Sequences
Splice sites
3' ss Seq
GATTCTCTGAAATTTCCCAGGTA
3' ss Score
5.97
5' ss Seq
GCGGTAGGA
5' ss Score
6.86
Exon sequences
Seq C1 exon
ATTCTCCTCATGAACCGAGAAGTCAATGCAGTGGAGTTGGATTTCCTGCTTCGATCTCCAGTGCAGACGGGCACCGCCAGCCCCGTGGAGTTCCTCTCCCATCAGGCGTGGGGAGCTGTCAAG
Seq A exon
GTACTTTCATCAATGGAAGAATTCTCTAATCTGGATCGGGACATAGAGGGATCTGCTAAGAGCTGGAAAAAGTTTGTGGAGTCCGAATGTCCTGAGAAAGAGAAGCTCCCACAGGAGTGGAAGAACAAGACAGCCCTGCAGCGCCTCTGCATGCTGAGAGCCATGCGGCCCGACCGGATGACCTATGCTTTGCG
Seq C2 exon
AGATTTTGTTGAAGAGAAGTTAGGAAGCAAATACGTGGTGGGAAGAGCCCTAGATTTTGCAACCTCATTTGAAGAATCGGGACCAGCCACTCCTATGTTTTTCATCCTGTCTCCAGGGGTGGACCCACTGAAGGATGTAGAAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'59-61,'59-60,60-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(11.1=48.8)
A:
PF0302810=Dynein_heavy=FE(35.6=100)
C2:
PF0302810=Dynein_heavy=FE(27.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGAAGTCAATGCAGTGG
R:
TCTACATCCTTCAGTGGGTCCA
Band lengths:
251-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)