BtaEX6087242 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31195096-31200901:+
Coord C1 exon
chr19:31195096-31195260
Coord A exon
chr19:31198460-31198600
Coord C2 exon
chr19:31200731-31200901
Length
141 bp
Sequences
Splice sites
3' ss Seq
GCTCTTGATTTTTCTAACAGGTG
3' ss Score
9.41
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
TCAGAGCTCACAAAGCAGCAGAATGGGTTCAAAATCACCCTCAAAACATTGGAAGACAACCTGCTGTCTCGCCTCTCCTCGGCCTCCGGGAACTTCCTGGGAGAAACGGCCCTGGTGGAGAACCTTGAGATCACCAAGCAGACTGCCGCGGAAGTTGAGAAAAAG
Seq A exon
GTGCAGGAGGCCAAGGTGACCGAGGTGAGAATCAACGAGGCTCGGGAGCACTACCGGCCGGCCGCCGCCCGGGCCTCTCTGCTCTACTTCATCATGAACGACCTCGGCAGGATCCACCCCATGTACCAGTTTTCTCTCAAG
Seq C2 exon
GCCTTCAGCATCGTCTTCCAGAAGGCTGTGGAGAAGGCGGCTCCTGGTGAGAACCTCAAGGAACGGGTGGCCAACCTAATAGACAGCATCACCTTCTCTGTGTGCCAGTACACCACCCGGGGGCTCTTCGAGTGTGATAAGCTGACCTACCTTGCCCAGCTCACCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'76-85,'76-84,77-85=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTCCTGGGAGAAACGGC
R:
CTGAAAGGTGAGCTGGGCAAG
Band lengths:
247-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]