MmuEX6086234 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65881628-65896005:-
Coord C1 exon
chr11:65895841-65896005
Coord A exon
chr11:65886615-65886755
Coord C2 exon
chr11:65881628-65881798
Length
141 bp
Sequences
Splice sites
3' ss Seq
ACAATGATCTGTGTTTCCAGGTC
3' ss Score
9.43
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TCCGATCTCACAAAGCAGCAGAACGGGTTCAAAATCACCCTCAAAACCTTAGAGGACAACCTGCTATCTCGCCTCTCTTCAGCCTCGGGGAACTTCCTGGGAGAAACAGCCTTGGTGGAGAACCTGGAGGTCACCAAGCAGACTGCTGCAGATGTGGAGGAAAAG
Seq A exon
GTCCAAGAAGCCAAATTGACAGAAGTAAAAATTAATGAGGCCCGAGAGCACTATAGGCCAGCAGCTGCCCGGGCATCTCTGCTCTACTTCATCATGAATGACCTCAGCAAGATCCATCCAATGTATCAGTTCTCCCTCAAG
Seq C2 exon
GCCTTCAGCATTGTCTTCCAGAAAGCTGTGGAGAAGGCAGCTCCCAGTGAAAGTGTCACAGAGCGAGTGACTAATCTAATAGACAGCATAACTTTCTCAGTGTACCAGTATACCACACGTGGCCTCTTTGAGTGTGATAAGCTGACCTACCTAGCCCAGCTCACCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'67-76,'67-75,68-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCTGCTATCTCGCCTCT
R:
ATCACACTCAAAGAGGCCACG
Band lengths:
248-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types