GgaEX6015763 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1145180-1151409:+
Coord C1 exon
chr18:1145180-1145344
Coord A exon
chr18:1147559-1147699
Coord C2 exon
chr18:1151239-1151409
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTTCTATGTTTTCCCTCCAGGTC
3' ss Score
12.53
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
TCAGATCTCACGAAGCAACAGAATGGATTCAAAATCACCCTGAAAACATTAGAGGACAACTTGTTGTCTCGGCTGTCCTCGGCATCTGGGAACTTCCTGGGAGACACAGCATTGGTGGAGAACTTGGAGACTACTAAGCAGACAGCAGCAGAAATTGAAGAAAAG
Seq A exon
GTCCAGGAGTCCAAGGTGACTGAAGCCAAGATTAACGAGGCAAGGGAGCACTACAGGCCTGCCGCTGCGCGGGCCTCCCTGCTGTACTTTGCCATGAACGACCTCCGTGCCATCCATCCCATGTACCAGTTTTCTCTGAAG
Seq C2 exon
GCATTCAGCATTGTGTTCCAGAAAGCCATTGAGAGGGCATCTCCTGATGAGAGCCTCCAGGTGCGAGTGTTGAACCTCATAGACAGCATCACCTTCTCTGTGTTCCAGTACACAACCCGGGGGCTGTTTGAGTGTGATAAACTGACCTACACAGCACAGGTTATCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'53-58,'53-56,54-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGAACTTCCTGGGAGAC
R:
ACCTGTGCTGTGTAGGTCAGT
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]