RnoEX0028652 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52396431-52410018:-
Coord C1 exon
chr10:52409854-52410018
Coord A exon
chr10:52400936-52401076
Coord C2 exon
chr10:52396431-52396601
Length
141 bp
Sequences
Splice sites
3' ss Seq
GCAATGATCTATGTTTCCAGGTC
3' ss Score
7.88
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
TCAGATCTCACTAAGCAGCAGAACGGTTTCAAAATCACCCTCAAAACCTTAGAGGACAACCTGCTGTCTCGCCTCTCTTCAGCCTCAGGGAACTTCCTGGGAGAAACAGCCTTGGTGGAGAACCTGGAGGTCACCAAGCAGACAGCTGCAGAGGTGCAGGAAAAG
Seq A exon
GTCCAGGAAGCCAAATTGACGGAAGTAAAAATCAATGAGGCCCGAGAGCACTATAGGCCAGCAGCTGCCCGGGCATCTCTGCTCTACTTCATCATGAATGACCTCAGCAAGATCCATCCGATGTATCAGTTCTCCCTCAAG
Seq C2 exon
GCCTTCAGCATTGTCTTCCAGAAAGCTGTGGAGAAGGCAGCTCCCAGTGAAGATGTCAAAGAGCGAGTCACTAATCTAATAGACAGTATAACTTTCTCAGTGTACCAGTACACCACGCGTGGCCTCTTCGAATGTGATAAGCTGACCTACCTAGCCCAGCTCACCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'80-76,'80-75,82-76
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCTTCAGCCTCAGGGAA
R:
CTGGGCTAGGTAGGTCAGCTT
Band lengths:
253-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]