HsaEX6021122 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11786903-11795264:+
Coord C1 exon
chr17:11786903-11787067
Coord A exon
chr17:11790142-11790282
Coord C2 exon
chr17:11795094-11795264
Length
141 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTATTTTTCCAACAGGTC
3' ss Score
10.76
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
TCCGATCTCACAAAGCAGCAGAATGGATTCAAAATTACCCTGAAAACGTTGGAAGACAGTCTTCTCTCTCGCCTCTCCTCCGCCTCTGGGAACTTCCTGGGAGAAACAGTGCTGGTGGAAAACCTAGAGATCACCAAGCAGACTGCTGCCGAAGTTGAGAAAAAG
Seq A exon
GTCCAGGAGGCCAAGGTGACTGAAGTGAAAATCAACGAGGCCCGAGAGCACTACCGGCCAGCAGCTGCCAGGGCCTCACTGCTCTACTTCATCATGAACGACCTCAGCAAGATCCATCCAATGTACCAGTTTTCTCTCAAG
Seq C2 exon
GCCTTCAGTATCGTCTTCCAGAAGGCTGTGGAGAGGGCTGCTCCTGACGAAAGCCTCAGGGAGCGGGTGGCCAACCTAATAGACAGCATAACCTTCTCTGTGTACCAGTACACCATCCGCGGGCTCTTTGAGTGTGATAAGCTGACCTACCTTGCCCAGCTCACCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'56-58,'56-57,57-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCTCTCGCCTCTCCTCC
R:
TATCACACTCAAAGAGCCCGC
Band lengths:
244-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)