BtaEX6088753 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001195 | KCNH4
Description
potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr19:42934392-42935874:-
Coord C1 exon
chr19:42935728-42935874
Coord A exon
chr19:42935470-42935594
Coord C2 exon
chr19:42934392-42934635
Length
125 bp
Sequences
Splice sites
3' ss Seq
CGTACCCTTCTTCCCAACAGAAA
3' ss Score
9.84
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GCTCAGCATTTTGGTGCCTCCTGGACATGATGCCCATCAAGAATGAGATGGGGGAGGTCGTACTTTTCCTCTTCTCCTTCAAGGACATCACTCAGAGCGGAGGCCCAGGACTTGGCCCCCCAGGAGGCCATGGCGATAGTAATCATG
Seq A exon
AAAACTCCCTTGGCAGGAGGGGAGCCAGCTCAAGACTTCGATCTGCCAGGAGGCAGAGCCGTACTGTCCTACACCGACTGACCGGCCACTTTGGCCGCCGGGGCCAGGGAGGCATGAAAACCAAT
Seq C2 exon
AACGTGTTTGAGCCAAAGCCATCAGTGCCCGAATACAAGGTGGCCTCCGTGGGGGGGTCCCGCTGCCTCCTCCTCCACTACAGCGTCCCCAAAGCCGTCTGGGATGGCCTCATCCTCCTTGCCACCTTCTATGTTGCGGTCACTGTCCCCTACAACGTCTGCTTCTCGGGTGATGATGACACCCCCATCACGTCCCGACACACCCTTGTCAGCGACATCGCCGTGGAGATGCTCTTCATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001195-'2-4,'2-2,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.330 A=0.560 C2=0.030
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(28.4=62.0)
A:
NO
C2:
PF0052026=Ion_trans=PU(5.7=14.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGAGATGGGGGAGGTCG
R:
GGGACAGTGACCGCAACATAG
Band lengths:
257-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]