RnoEX6049698 @ rn6
Exon Skipping
Gene
ENSRNOG00000018790 | Kcnh4
Description
potassium voltage-gated channel subfamily H member 4 [Source:RGD Symbol;Acc:621415]
Coordinates
chr10:88663399-88664919:-
Coord C1 exon
chr10:88664773-88664919
Coord A exon
chr10:88664550-88664677
Coord C2 exon
chr10:88663399-88663642
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCCACTTTTTTTCCCAATAGAAA
3' ss Score
9.51
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GCTCGGCCTTTTGGTGTCTTCTGGACATGATGCCCATCAAAAATGAGATGGGAGAGGTTGTGCTTTTCCTATTTTCCTTTAAGGACATCTCTCAGAGTGGAGGCCCAGGACTTGGCTCACCAGGGATCCATGGGGACAATAATCATG
Seq A exon
AAAACTCCCTTGGGAGGAGAGGAGCTAGCTCAAGACTTAGGTCCACGAGGAGGCAGAACCGGACAGTTCTACACCGGTTGACTGGCCACTTTGGTCGCCGGGACCAGGGAAGCGTGAAAGCCAATAGT
Seq C2 exon
AACGTGTTTGAGCCAAAGCCATCAGTGCCTGAGTACAAAGTGGCCTCCGTGGGGGGCTCCCGCTGCCTGCTCCTCCACTACAGCATCCCCAAGGCTGTCTGGGACGGTCTCATCCTTCTCGCTACGTTCTACGTCGCGGTCACCGTCCCTTACAACGTCTGCTTCGCTGGTGATGACGACACCCCCATCACGTCCCGACACACCCTTGTCAGTGACATCGCTGTGGAGATGCTCTTCATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018790-'3-5,'3-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=0.395 C2=0.012
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(28.4=62.0)
A:
NO
C2:
PF0052026=Ion_trans=PU(5.7=14.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGAGGTTGTGCTTTTCC
R:
GACGTTGTAAGGGACGGTGAC
Band lengths:
258-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]