GgaEX6027535 @ galGal3
Exon Skipping
Gene
ENSGALG00000003354 | KCNH4
Description
NA
Coordinates
chr27:4505059-4506520:-
Coord C1 exon
chr27:4506389-4506520
Coord A exon
chr27:4505985-4506112
Coord C2 exon
chr27:4505059-4505302
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCAGCACGTCATCTCTGCAGAGA
3' ss Score
5.51
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GAGCTGCATTCTGGTGCCTGCTGGACATTATGCCCATCAAGAACGAGAAGGGGGAGGTGGTGCTCTTCCTCGTCTCCTTCAAGGACATCACAGAGAGCCGGGGCAAGAGCCATCCAAGTGACAAAAAGGAGG
Seq A exon
AGAAGCAGAGGAGCAAGAAACCCGGCAGCTCACACCTGCGGGCGGCACGGCGGCAGGGCCGGACGGTGCTGCACCGGCTCAGCAGCCAGTTTGCACGGCAGGACCGCGGTGAGATGAAAATCAATCGG
Seq C2 exon
AATGTGTTTGAGAACAAGCCCTCCATCCCCGAGTACAAGGTGGCCTCGGTGCAGAAAGCCCACTTCATCCTGCTGCACTACAGCATCTTCAAGGCCCTCTGGGACTGGCTGATCCTGGTGGCCACTTTTTATGTGGCTGTCACTGTCCCCTACAACGTCTGCTTCACCAGCACGGAGGACAGCCTCTCGGCCGCACGCAGCACCATCGTCAGTGACATCGCGGTGGAGATGCTCTTCATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003354-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.302 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(28.4=68.9)
A:
PF084125=Ion_trans_N=PU(10.0=16.3)
C2:
PF084125=Ion_trans_N=PD(87.1=74.4),PF0052026=Ion_trans=PU(5.7=14.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAACGAGAAGGGGGAGG
R:
ACGTTGTAGGGGACAGTGACA
Band lengths:
254-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]