MmuEX6089754 @ mm9
Exon Skipping
Gene
ENSMUSG00000035355 | Kcnh4
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4 [Source:MGI Symbol;Acc:MGI:2156184]
Coordinates
chr11:100616984-100618539:-
Coord C1 exon
chr11:100618393-100618539
Coord A exon
chr11:100618174-100618301
Coord C2 exon
chr11:100616984-100617227
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTCCCCCCTCCCCCCAACAGAAA
3' ss Score
10.94
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GCTCAGCCTTCTGGTGTCTTCTGGACATGATGCCCATCAAGAATGAGATGGGGGAGGTTGTGCTTTTCCTATTTTCCTTCAAGGACATCTCTCAGAGTGGAGGCCCAGGACTTGGCTCACCAGGAATCCATGGGGACAATAATCACG
Seq A exon
AAAACTCTCTTGGGAGGAGAGGAACTAGCTCAAGACTTAGGTCCACGAAGAGGCAGAACCGGACTGTCCTACACCGGTTGACTGGCCACTTTGGTCGCCGGGGCCAGAGCAGTGTGAAGGCCAACAGT
Seq C2 exon
AACCTGTTTGAGCCAAAACCATCAGTGCCCGAGTACAAGGTGGCCTCTGTGGGGGGCTCCCGCTGCCTCCTCCTCCACTACAGCATCCCCAAGGCTGTCTGGGATGGTCTCATCCTCCTCGCCACATTCTACGTCGCGGTCACTGTCCCCTACAACGTCTGCTTCGCGGGTGATGACGACACCCCCATCACTTCCCGACACACCCTTGTCAGTGACATCGCTGTGGAAATGCTCTTCATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035355-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=0.395 C2=0.012
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(28.4=62.0)
A:
NO
C2:
PF0052026=Ion_trans=PU(5.7=14.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTCTCAGAGTGGAGGCC
R:
AAGTGATGGGGGTGTCGTCAT
Band lengths:
256-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: