GgaEX6019361 @ galGal3
Exon Skipping
Gene
ENSGALG00000011262 | KCNH8
Description
NA
Coordinates
chr2:35553716-35565695:+
Coord C1 exon
chr2:35553716-35553847
Coord A exon
chr2:35562227-35562354
Coord C2 exon
chr2:35565455-35565695
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTCTCACCTCTGTTCTACAGAGA
3' ss Score
7.69
5' ss Seq
AACGTAGGT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GGTCTTCATTCTGGTGCCTATTGGATATTGTTCCTATAAAGAATGAAAAAGGAGATGTAGTACTATTTCTGGCCTCTTTCAAAGATATAACAGACACAAAAGTGAAGATTGCTGCAGAAGACAAAAAGGAAG
Seq A exon
AGAAATGGAAAGGAAGAGGAAGAGCAGGGTCACATTTTGATTCAGCACGAAGACGGAGTAGAGCTGTCCTTTATCATATCTCTGGACACCTACAAAGAAGAGAGAAGAACAAATTAAAAATTAATAAC
Seq C2 exon
AACGTTTTTGTAGATAAACCAGCATTTCCAGAATACAAAGTTTCAGATGCAAAAAAATCCAAATTCATACTGTTGCATTTTAGCACTTTCAAAGCTGGCTGGGACTGGCTTATTTTACTGGCAACGTTTTATGTTGCTGTGACTGTACCTTACAATGTTTGCTTTATTGGCCATGATGAGCTGTCTACAACTCGAAGCACAACTGTCAGTGACATTGCAGTGGAAATTCTTTTTATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011262-'3-4,'3-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(26.1=68.9)
A:
NO
C2:
PF0052026=Ion_trans=PU(5.7=14.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAAGATTGCTGCAGAAGACA
R:
GTCACTGACAGTTGTGCTTCGA
Band lengths:
245-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]