RnoEX6038438 @ rn6
Exon Skipping
Gene
ENSRNOG00000058626 | Kcnh8
Description
potassium voltage-gated channel subfamily H member 8 [Source:RGD Symbol;Acc:2549]
Coordinates
chr9:3409613-3461766:-
Coord C1 exon
chr9:3461635-3461766
Coord A exon
chr9:3415375-3415502
Coord C2 exon
chr9:3409613-3409853
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGAGTCTTCTTTTCCTCCAGACA
3' ss Score
9.28
5' ss Seq
AATGTAGGT
5' ss Score
5.12
Exon sequences
Seq C1 exon
GGGCTCCATTTTGGTGCCTGTTGGATATCGTTCCTATAAAGAATGAGAAAGGAGATGTGGTCCTTTTCCTGGCCTCATTCAAAGATATAACAGACACGAAAGTGAAGATTACTTCAGAAGATAAAAAAGAAG
Seq A exon
ACAGAGCCAAAGGAAGATCAAGAGCAGGGAGCCACTTCGACTCAGCCCGCAGACGGAGCCGAGCAGTCCTTTATCACATCTCAGGACACCTGCAAAGAAGAGAAAAGAACAAATTGAAAATAAATAAT
Seq C2 exon
AACGTGTTTGTAGATAAACCGGCGTTTCCAGAGTATAAGGTTTCCGATGCAAAAAAGTCCAAGTTCATCCTGCTGCACTTCAGCACTTTTAAAGCTGGCTGGGACTGGCTCATTTTGCTGGCAACGTTTTATGTTGCTGTGACAGTCCCTTACAACGTGTGCTTCATTGGCAATGAGGATCTGTCCACAACTCGGAGCACAACGGTCAGTGACATCGCTGTGGAGATTCTCTTCATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058626-'2-5,'2-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.233 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(28.4=68.9)
A:
NO
C2:
PF0052026=Ion_trans=PU(5.7=14.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTTTGGTGCCTGTTGGA
R:
GTTGCCAGCAAAATGAGCCAG
Band lengths:
253-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]