DreEX6072860 @ danRer10
Exon Skipping
Gene
ENSDARG00000062640 | kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:ZFIN;Acc:ZDB-GENE-060503-204]
Coordinates
chr19:20972167-20985668:+
Coord C1 exon
chr19:20972167-20972298
Coord A exon
chr19:20981033-20981163
Coord C2 exon
chr19:20985434-20985668
Length
131 bp
Sequences
Splice sites
3' ss Seq
ACAGTCCAACCTTTTCTCAGAGT
3' ss Score
6.67
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTAGTGTTTTTTGGTGTCTGCTGGATATTGTGCCTATTAAGAATGAGAAAGGAGATGTCGTGCTGTTCCTCGCCTCTTTTAAAGACGTCACCGACACCAAAGCCAAATCTACACTTGAGGAGAAGAAAGAAG
Seq A exon
AGTGCCGGCGTGAGAAGGTCAAGGGAGACTCTCCGTTTGGCTCCACGAGACTGCGATCAAGCACAGTTCTCTACCACATTTCAGGACACCTGCACAACCGTCAGAAACAGAGCAAAATTAAACTTAACAAG
Seq C2 exon
AATGTGTTTGGGGATCCACCCGCTCTGCCTGAATATAAAGTCGCTGATGCCAAGAAATCCAAGTTCATTCTTCTCCACTTCAGCACCTTTAAAGCAGGCTGGGATTGGCTGATCCTTCTGGCTACCTTTTATGTGGCTGTTACGGTGCCGTACAATGTTTGTTTTATAGGTGATCAAGATTTGACACGCAGCACCACCGTCACTGACATTGCTGTTGAGATACTCTTTATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062640-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(28.4=68.9)
A:
PF084125=Ion_trans_N=PU(13.7=22.7)
C2:
PF084125=Ion_trans_N=PD(83.6=77.2),PF0052026=Ion_trans=PU(5.6=15.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGTCGTGCTGTTCCTCG
R:
ACAAACATTGTACGGCACCGT
Band lengths:
243-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]