MmuEX6078360 @ mm10
Exon Skipping
Gene
ENSMUSG00000035580 | Kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:MGI Symbol;Acc:MGI:2445160]
Coordinates
chr17:52753573-52803573:+
Coord C1 exon
chr17:52753573-52753704
Coord A exon
chr17:52797419-52797546
Coord C2 exon
chr17:52803333-52803573
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGAGTCTTATTTCCCTCCAGACA
3' ss Score
8.8
5' ss Seq
AATGTAGGT
5' ss Score
5.12
Exon sequences
Seq C1 exon
GGGCTCCATTTTGGTGCCTGCTGGATATCGTTCCTATAAAGAATGAGAAAGGAGATGTAGTCCTTTTCCTGGCCTCATTCAAAGACATAACAGACACGAAAGTGAAGATTACATCAGAAGATAAAAAAGAAG
Seq A exon
ACAGAACCAAAGGAAGATCAAGAGCAGGGAGCCACTTTGACTCAGCCCGGAGACGGAGCCGAGCCGTCCTTTATCACATCTCAGGACACCTTCAAAGAAGAGAAAAGAACAAATTGAAAATAAATAAT
Seq C2 exon
AACGTGTTTGTAGATAAACCAGCGTTTCCAGAGTATAAGGTTTCTGATGCAAAAAAGTCCAAGTTCATCCTGCTGCATTTCAGCACTTTCAAAGCTGGCTGGGACTGGCTCATTTTGCTGGCAACGTTTTATGTTGCTGTGACAGTCCCTTACAATGTGTGTTTCATTGGCAATGAGGACCTGTCCACCACTCGGAGCACAACGGTCAGTGACATTGCAGTGGAGATACTGTTCATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035580-'1-14,'1-3,4-14=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.256 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(28.4=68.9)
A:
NO
C2:
PF0052026=Ion_trans=PU(5.7=14.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTGCTGGATATCGTTCC
R:
GTTGCCAGCAAAATGAGCCAG
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types