BtaEX6088812 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019218 | ATP6V0A1
Description
Bos taurus ATPase, H+ transporting, lysosomal V0 subunit a1 (ATP6V0A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174754]
Coordinates
chr19:43214086-43220390:+
Coord C1 exon
chr19:43214086-43214214
Coord A exon
chr19:43219862-43219944
Coord C2 exon
chr19:43220264-43220390
Length
83 bp
Sequences
Splice sites
3' ss Seq
CTGAATTGCATCATCAGCAGATG
3' ss Score
3.09
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GCTAATTTTGAGAAGATTGAAAATGAACTGAAGGAAATCAACACAAACCAGGAAGCTCTGAAGAGAAATTTCCTAGAACTAACTGAATTAAAATTTATACTTCGCAAAACTCAACAGTTTTTTGATGAG
Seq A exon
ATGGCGGATCCAGACCTGTTGGAAGAGTCCTCGTCCCTCTTGGAGCCAAGCGAGATGGGAAGAGGCACGCCCTTGAGACTTGG
Seq C2 exon
CTTCGTGGCTGGTGTGATTAACCGGGAGCGCATCCCTACTTTTGAGCGCATGCTTTGGCGGGTGTGCCGGGGGAATGTGTTCCTGCGGCAGGCTGAAATCGAGAACCCCCTGGAGGATCCTGTGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019218-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.238 C2=0.039
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(22.3=100)
A:
PF0149614=V_ATPase_I=FE(14.4=100)
C2:
PF0149614=V_ATPase_I=FE(22.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAAACCAGGAAGCTCTGA
R:
GAACACATTCCCCCGGCAC
Band lengths:
171-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]