GgaEX6027568 @ galGal4
Exon Skipping
Gene
ENSGALG00000003256 | ATP6V0A1
Description
V-type proton ATPase 116 kDa subunit a isoform 1 [Source:RefSeq peptide;Acc:NP_990055]
Coordinates
chr27:4931298-4937156:+
Coord C1 exon
chr27:4931298-4931426
Coord A exon
chr27:4936102-4936184
Coord C2 exon
chr27:4937030-4937156
Length
83 bp
Sequences
Splice sites
3' ss Seq
CTGAATTGCATCATCAGCAGATG
3' ss Score
3.09
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
GCCAACTTTGAGAAAATTGAAAATGAGCTTAAAGAAATCAACACAAATCAAGAAGCTCTGAAAAGAAACTTCTTGGAGCTGACAGAGTTAAAATTTATACTGCGTAAAACTCAGCAATTTTTTGACGAG
Seq A exon
ATGGCGGATCCAGACCTGTTGGAGGAATCCTCTTCGCTCCTGGAGCCAAGTGAGATGGGAAGAGGTGCCCCGCTACGGCTTGG
Seq C2 exon
GTTTGTGGCTGGAGTGATCAACCGCGAGCGAATCCCCACGTTTGAGCGCATGCTGTGGCGTGTGTGCCGGGGGAACGTCTTCCTGCGCCAGGCTGAAATTGAGAACCCCCTGGAGGATCCCGTAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256-'5-13,'5-10,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(32.8=100)
A:
PF0149614=V_ATPase_I=FE(3.4=100)
C2:
PF0149614=V_ATPase_I=FE(5.3=100)
Main Skipping Isoform:
ENSGALT00000005154fB5285
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTTGGAGCTGACAGAGT
R:
GATCCTCCAGGGGGTTCTCAA
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]