GgaEX6027568 @ galGal3
Exon Skipping
Gene
ENSGALG00000003256 | ATP6V0A1
Description
NA
Coordinates
chr27:4586974-4592820:+
Coord C1 exon
chr27:4586974-4587090
Coord A exon
chr27:4591766-4591848
Coord C2 exon
chr27:4592694-4592820
Length
83 bp
Sequences
Splice sites
3' ss Seq
CTGAATTGCATCATCAGCAGATG
3' ss Score
3.09
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
AAAATTGAAAATGAGCTTAAAGAAATCAACACAAATCAAGAAGCTCTGAAAAGAAACTTCTTGGAGCTGACAGAGTTAAAATTTATACTGCGTAAAACTCAGCAATTTTTTGACGAG
Seq A exon
ATGGCGGATCCAGACCTGTTGGAGGAATCCTCTTCGCTCCTGGAGCCAAGTGAGATGGGAAGAGGTGCCCCGCTACGGCTTGG
Seq C2 exon
GTTTGTGGCTGGAGTGATCAACCGCGAGCGAATCCCCACGTTTGAGCGCATGCTGTGGCGTGTGTGCCGGGGGAACGTCTTCCTGCGCCAGGCTGAAATTGAGAACCCCCTGGAGGATCCCGTAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256-'6-12,'6-11,8-12=AN
Average complexity
A_S
Mappability confidence:
89%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.079 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
PF0149614=V_ATPase_I=FE(3.5=100)
C2:
PF0149614=V_ATPase_I=FE(5.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTTGGAGCTGACAGAGT
R:
GATCCTCCAGGGGGTTCTCAA
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]