RnoEX6049733 @ rn6
Exon Skipping
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88924739-88931772:+
Coord C1 exon
chr10:88924739-88924867
Coord A exon
chr10:88930842-88930924
Coord C2 exon
chr10:88931646-88931772
Length
83 bp
Sequences
Splice sites
3' ss Seq
CTGAATTGCATCATCAGCAGATG
3' ss Score
3.09
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GCCAATTTCGAGAAGATCGAAAACGAACTGAAGGAAATCAACACTAACCAGGAAGCTCTAAAGCGAAACTTCCTGGAACTGACTGAATTAAAATTTATACTGCGCAAAACTCAGCAGTTTTTCGATGAG
Seq A exon
ATGGCGGATCCAGACCTGTTGGAAGAGTCCTCATCACTCTTGGAGCCAAACGAGATGGGAAGAGGCGCGCCTTTACGACTTGG
Seq C2 exon
CTTCGTAGCTGGTGTGATTAACCGGGAACGGATCCCGACCTTTGAGCGCATGCTTTGGCGAGTGTGCCGAGGGAATGTGTTCCTGAGACAGGCTGAAATCGAAAACCCGCTGGAGGATCCCGTGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814-'15-17,'15-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.214 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(13.2=100)
A:
PF0149614=V_ATPase_I=FE(3.4=100)
C2:
PF0149614=V_ATPase_I=FE(13.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAACTTCCTGGAACTGACT
R:
CCTCCAGCGGGTTTTCGATTT
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]