BtaEX6089115 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001610 | BEB3
Description
Bos taurus solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group) (SLC4A1), mRNA. [Source:RefSeq mRNA;Acc:NM_181036]
Coordinates
chr19:44694976-44696485:-
Coord C1 exon
chr19:44696396-44696485
Coord A exon
chr19:44695722-44695888
Coord C2 exon
chr19:44694976-44695229
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCAGCATTCTCATCCCACAGAAA
3' ss Score
8.12
5' ss Seq
CACGTAAGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
CTGCGACGAATCATTGGGGACTTCGGGGTTCCTATCTCTATCCTGATCATGGTCATGGTGGATGCCCTCATCCAGGACACCTACACCCAG
Seq A exon
AAACTCAGTGTACCTGAAGGCCTCTCTGTATCTAACCCCACGGAGCGAGACTGGCTTATCCACCCACTAGGCATACGTGTCGAATTTCCCATCTGGATGATGTTTGCTTCTGCCCTGCCTGCCCTGCTGGTCTTTATTCTCATCTTCCTTGAGTCCCAGATCACCAC
Seq C2 exon
GCTGATCATCAGTAAACCGGAGCGCAAGATGGTCAAGGGCTCTGGCTTCCACCTGGACCTGCTGCTGATCATAGGCATGGGTGGGGTGGGTGCCATCTTTGGGATGCCCTGGCTCAGCGCCACTACGGTGCGCACTGTCACCCATGCCAATGCCCTCACTGTCATGAGCAAGGACAGCACTCCAGGGGCTGTATCCCAGATTCAGGGAGTCAAGGAACAGCGGATCAGTGGACTTCTGGTCGCTGTGCTCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001610-'18-22,'18-21,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.2=100)
A:
PF0095516=HCO3_cotransp=FE(19.3=100)
C2:
PF0095516=HCO3_cotransp=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGGACACCTACACCCAG
R:
AGAAGTCCACTGATCCGCTGT
Band lengths:
258-425
Functional annotations
There are 1 annotated functions for this event
PMID: 10364201
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000605; ELM sequence: SNSSAR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]