DreEX0073031 @ danRer10
Exon Skipping
Gene
ENSDARG00000012881 | slc4a1a
Description
solute carrier family 4 (anion exchanger), member 1a (Diego blood group) [Source:ZFIN;Acc:ZDB-GENE-010525-1]
Coordinates
chr3:19921440-19924131:-
Coord C1 exon
chr3:19924042-19924131
Coord A exon
chr3:19922716-19922882
Coord C2 exon
chr3:19921440-19921681
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTCCTCCTGCTTTAGAAA
3' ss Score
9.12
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ATCCGTCGGATGGTTGGAGATTTTGGTGTCCCCATCGCCATCTTCTTCATGATTGCTGTGGATATCAGCATCAGTGATGCCTACACACAG
Seq A exon
AAACTGGTGGTGCCAAAGGGTCTGACCGTGTCCAACACTTCTGCCAGAGGCTGGTTTATCAGCCCGTTTGGTGAGAAGAAGACATTCCCTGTCTGGATGATGTTTGCCTGTGTTGTTCCTGCCATGTTGGTCTTCATCCTTATTTTCCTTGAGTCCCAGATCACCAC
Seq C2 exon
GCTGATCGTGAGTAAACCTGAGCGGAAAATGGTGAAGGGCTCTGGTTTCCATGTGGACCTCCTCCTGCTGGTGTTCCTGGGAGGAGTTGGATCTCTGTTTGGTGTCCCGTGGCTCAGTGCTGCTACTGTGAGGTCTGTGACCCACGCCAATGCCCTAACCGTCATGACCAAAGGCCCCAGACCTCAGATTGAACGCGTGTTAGAGCAAAGAGTCAGTGGGATTTTGGTGGCGGTGATGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012881_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(5.9=100)
A:
PF0095516=HCO3_cotransp=FE(11.2=100)
C2:
PF0095516=HCO3_cotransp=FE(16.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCATCGCCATCTTCTTCA
R:
GCGTTCAATCTGAGGTCTGGG
Band lengths:
258-425
Functional annotations
There are 1 annotated functions for this event
PMID: 10364201
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000605; ELM sequence: SNSSAR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]