MmuEX6090090 @ mm10
Exon Skipping
Gene
ENSMUSG00000006574 | Slc4a1
Description
solute carrier family 4 (anion exchanger), member 1 [Source:MGI Symbol;Acc:MGI:109393]
Coordinates
chr11:102352439-102353913:-
Coord C1 exon
chr11:102353824-102353913
Coord A exon
chr11:102353191-102353357
Coord C2 exon
chr11:102352439-102352692
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCAGCTGTCTCTTCTCACAGAAA
3' ss Score
9.32
5' ss Seq
CACGTAAGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
CTGCGTAGAGTCATTGGGGACTTCGGGGTCCCCATCTCCATCCTGATAATGGTCCTGGTGGATTCCTTCATCAAGGGCACCTACACACAG
Seq A exon
AAACTCTCCGTGCCTGATGGCCTCAAAGTGTCCAACTCCTCCGCCCGGGGCTGGGTCATCCACCCTCTGGGGCTGTATAGACTTTTCCCCACGTGGATGATGTTTGCCTCCGTTCTGCCCGCCCTGCTTGTCTTCATTCTCATTTTCCTTGAGTCTCAGATCACCAC
Seq C2 exon
GCTGATTGTCAGTAAACCAGAACGGAAGATGATCAAGGGCTCTGGCTTCCACCTGGACCTGTTGCTGGTCGTTGGCATGGGTGGGGTGGCTGCCCTCTTTGGGATGCCTTGGCTCAGTGCCACCACTGTAAGATCTGTTACCCACGCCAATGCCCTCACAGTCATGGGGAAGGCCAGTGGTCCAGGGGCTGCAGCCCAGATCCAAGAGGTCAAGGAACAGCGGATCAGTGGGCTCCTGGTCTCTGTGCTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006574-'27-27,'27-26,28-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.1=100)
A:
PF0095516=HCO3_cotransp=FE(19.2=100)
C2:
PF0095516=HCO3_cotransp=FE(29.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTGGTGGATTCCTTCA
R:
TTGACCTCTTGGATCTGGGCT
Band lengths:
254-421
Functional annotations
There are 1 annotated functions for this event
PMID: 10364201
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000605; ELM sequence: SNSSAR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types