RnoEX0082769 @ rn6
Exon Skipping
Gene
ENSRNOG00000020951 | Slc4a1
Description
solute carrier family 4 member 1 [Source:RGD Symbol;Acc:3710]
Coordinates
chr10:90299934-90301457:-
Coord C1 exon
chr10:90301368-90301457
Coord A exon
chr10:90300701-90300867
Coord C2 exon
chr10:90299934-90300187
Length
167 bp
Sequences
Splice sites
3' ss Seq
CCATCTGTCTCTTCTCACAGAAA
3' ss Score
11.13
5' ss Seq
CACGTAAGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
CTACGCAGAGTCATTGGGGACTTTGGGGTCCCCATCTCCATCCTGATAATGGTCCTGGTGGATACCTTCATCAAGAACACCTACACGCAG
Seq A exon
AAACTCTCGGTGCCTGATGGCCTTAAAGTGTCCAACTCCTCCGCCCGGGGCTGGGTCATCCATCCCCTGGGTCTGTATAACCATTTCCCCAAGTGGATGATGTTTGCTTCTGTTCTACCCGCTCTGCTTGTCTTCATCCTTATATTCCTTGAGTCTCAGATCACCAC
Seq C2 exon
GCTGATTGTCAGTAAACCTGAGCGGAAGATGATCAAGGGCTCCGGCTTCCACCTGGACTTGCTGCTGGTTGTTGGCATGGGCGGGGTGGCCGCCCTCTTTGGGATGCCTTGGCTCAGCGCCACCACTGTGCGTTCTGTTACCCATGCCAACGCCCTCACAGTCATGGGGAAGGCCAGTGGTCCAGGGGCTGCAGCCCAGATCCAAGAGGTCAAGGAACAGCGGATCAGTGGGCTCCTGGTCTCTGTGCTCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020951-'22-27,'22-26,23-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.2=100)
A:
PF0095516=HCO3_cotransp=FE(19.3=100)
C2:
PF0095516=HCO3_cotransp=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGCAGAGTCATTGGGGAC
R:
GCGTTGGCATGGGTAACAGAA
Band lengths:
243-410
Functional annotations
There are 1 annotated functions for this event
PMID: 10364201
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000605; ELM sequence: SNSSAR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]