BtaEX6089468 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015739 | MRC2
Description
Bos taurus mannose receptor, C type 2 (MRC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192670]
Coordinates
chr19:47733878-47736536:+
Coord C1 exon
chr19:47733878-47734026
Coord A exon
chr19:47734857-47735074
Coord C2 exon
chr19:47736394-47736536
Length
218 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCCTCCCTCCTCCAGGGT
3' ss Score
12.92
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTTCGAGCAGGCCTTTGTCAGCAGCCTCATCTACAACTGGGATGGCGAGTACTTCTGGACGGCCCTGCAGGACCTCAACTTCACCGGTTCCTTCCGCTGGCTCAGCGGGGACGAGGTCATGTACACCCACTGGAACCGGGACCAGCCTG
Seq A exon
GGTACAGCCGTGGGGGCTGCGTGGCCCTGGCCACAGGCAGTGCCATGGGGCTGTGGGAGGTGAAGAACTGCACATCGTTCCGGGCTCGCTACATCTGCCGCCAGAGCCTGGGCACGCCCGTGACGCCTGAGCTGCCTGGGCTAGACCCCACGCCCAGCCTCACCGGCGCCTGTCCGCAGGGCTGGGGCTCAGATCCCAAACTCCGGCACTGCTATAAG
Seq C2 exon
GTGTTCAGCTCGGAGCGGCTGCAGGATAAGAAGACCTGGGTCCAGGCCCAGGGGGCCTGCCAGGAGCTGGGGGCCCAGCTGCTGAGCCTGGCCAGCTACGAAGAGGAGCACTTTGTGGCCAACATGCTCAACAAGATCTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015739-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.164 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(45.9=100)
A:
PF0005916=Lectin_C=PD(31.2=46.6)
C2:
PF0005916=Lectin_C=PU(33.1=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGAGCAGGCCTTTGTCAG
R:
CCGAAGATCTTGTTGAGCATGT
Band lengths:
292-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]