GgaEX6027265 @ galGal4
Exon Skipping
Gene
ENSGALG00000000461 | MRC2
Description
mannose receptor, C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr27:2419193-2420023:+
Coord C1 exon
chr27:2419193-2419341
Coord A exon
chr27:2419445-2419662
Coord C2 exon
chr27:2419881-2420023
Length
218 bp
Sequences
Splice sites
3' ss Seq
GACCCTGAGGCTGGCTGCAGGTT
3' ss Score
0.5
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTTTGAGCAGGCGTATGTCAGCAGCCTCATCTATGGATGGGATGGAGAGTACTTCTGGACAGCCCTGCAGGACATCAACGAGACGGGCGCGTTCCGCTGGCTGAGCGGCGATGAGGTGATGTACACCCACTGGAACCGCGACCAGCCCG
Seq A exon
GTTACAATAAGGGTGGCTGCGTGGCCCTGGCCACCGGCAGCTCCATGGGGCTGTGGGAGGTGAAGAACTGCAGCACTTTCAAGGCCAAGTACATCTGCCGGCAGAACCTGGGCACGCCAGTGAACCCCGAGCTGCCCAGCGCCTACCCTACACCCAGCCTCACTGGGACCTGCCCGCTGGGATGGAGCGCAGACCCCAAGCTGCGGCACTGCTACAAG
Seq C2 exon
GTGTTTAACTTTGACAAGCTGCAAGAGAAGAAGACATGGATCGCAGCACAGGAGTTCTGCCGGGAGCTGGGAGCCCAGCTGCTCAGCCTGGGCAGCTACGAGGAGGAGCACTTTGTGGCTAACACCCTCAACAAGATTTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000461-'10-15,'10-13,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(45.9=100)
A:
PF0005916=Lectin_C=PD(31.2=46.6)
C2:
PF0005916=Lectin_C=PU(33.1=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGAGCAGGCGTATGTCAG
R:
CCAAAAATCTTGTTGAGGGTGT
Band lengths:
292-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]