MmuEX6090429 @ mm10
Exon Skipping
Gene
ENSMUSG00000020695 | Mrc2
Description
mannose receptor, C type 2 [Source:MGI Symbol;Acc:MGI:107818]
Coordinates
chr11:105336625-105338934:+
Coord C1 exon
chr11:105336625-105336773
Coord A exon
chr11:105337628-105337845
Coord C2 exon
chr11:105338792-105338934
Length
218 bp
Sequences
Splice sites
3' ss Seq
AAGCTCTTTCTCCTTCTCAGGGT
3' ss Score
8.02
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GTTTGAGCAGGCCTTCGTCAGCAGCCTCATCTATAACTGGGAGGGCGAATACTTCTGGACAGCCCTGCAAGACCTCAACAGTACTGGCTCCTTCCGTTGGCTCAGTGGGGATGAAGTCATATATACCCATTGGAATCGAGACCAGCCTG
Seq A exon
GGTACAGACGTGGAGGCTGTGTGGCTCTGGCCACTGGCAGTGCCATGGGACTGTGGGAGGTGAAGAACTGCACATCGTTCCGGGCTCGCTACATCTGCCGACAGAGCCTGGGCACACCGGTCACACCAGAGCTGCCTGGGCCAGACCCCACGCCCAGCCTCACTGGCTCCTGTCCCCAGGGCTGGGTCTCAGACCCCAAACTCCGACACTGCTATAAG
Seq C2 exon
GTGTTCAGCTCAGAGCGGCTGCAGGAGAAGAAGAGTTGGATCCAGGCCCTGGGGGTCTGCCGGGAGTTGGGGGCCCAGCTGCTGAGTCTGGCCAGCTATGAGGAGGAGCACTTTGTGGCCCACATGCTCAACAAGATCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020695-'17-33,'17-22,20-33=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.192 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(45.9=100)
A:
PF0005916=Lectin_C=PD(31.2=46.6)
C2:
PF0005916=Lectin_C=PU(33.1=81.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGAGCAGGCCTTCGTCAG
R:
CCAAAGATCTTGTTGAGCATGTGG
Band lengths:
292-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types