HsaEX0040056 @ hg38
Exon Skipping
Gene
ENSG00000011028 | MRC2
Description
mannose receptor C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr17:62676383-62678646:+
Coord C1 exon
chr17:62676383-62676531
Coord A exon
chr17:62677269-62677486
Coord C2 exon
chr17:62678504-62678646
Length
218 bp
Sequences
Splice sites
3' ss Seq
CTCCCTTCCCTCTCCTTCAGGGT
3' ss Score
13.2
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTTCGAGCAGGCCTTCGTCAGCAGCCTCATCTACAACTGGGAGGGCGAGTACTTCTGGACGGCCCTGCAGGACCTCAACAGCACCGGCTCCTTCTTCTGGCTCAGTGGGGATGAAGTCATGTACACCCACTGGAACCGGGACCAGCCCG
Seq A exon
GGTACAGCCGTGGGGGCTGCGTGGCGCTGGCCACTGGCAGCGCCATGGGGCTGTGGGAGGTGAAGAACTGTACCTCGTTCCGGGCCCGCTACATCTGCCGGCAGAGCCTGGGCACTCCAGTGACGCCGGAGCTGCCGGGGCCAGATCCCACGCCCAGCCTCACTGGCTCCTGTCCCCAGGGCTGGGCCTCGGACACCAAACTCCGGTATTGCTATAAG
Seq C2 exon
GTGTTCAGCTCAGAGCGGCTGCAGGACAAGAAGAGCTGGGTCCAGGCCCAGGGGGCCTGCCAGGAGCTGGGGGCCCAGCTGCTGAGCCTGGCCAGCTACGAGGAGGAGCACTTTGTGGCCAACATGCTCAACAAGATCTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011028-'27-29,'27-28,30-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.219 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(45.9=100)
A:
PF0005916=Lectin_C=PD(31.2=46.6)
C2:
PF0005916=Lectin_C=PU(33.1=81.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGAGCAGGCCTTCGTC
R:
CCGAAGATCTTGTTGAGCATGT
Band lengths:
292-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development