RnoEX0055565 @ rn6
Exon Skipping
Gene
ENSRNOG00000006548 | Mrc2
Description
mannose receptor, C type 2 [Source:RGD Symbol;Acc:1559436]
Coordinates
chr10:93563947-93569109:+
Coord C1 exon
chr10:93563947-93564054
Coord A exon
chr10:93567721-93567938
Coord C2 exon
chr10:93568967-93569109
Length
218 bp
Sequences
Splice sites
3' ss Seq
AGGCTCTTTCTCCTTCTCAGGGT
3' ss Score
8.53
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GAAGGACGCTGGAATGACAGTCCCTGTAACCAATCCTTGCCCTCCATCTGCAAGAAGGCAGGCCGACTGAGCCAGGGCACTGCAGAGGAGGACCATGGCTGCCGGAAG
Seq A exon
GGTACAGACGTGGGGGCTGTGTGGCTCTGGCCACGGGCAGTGCCATGGGACTGTGGGAGGTGAAGAACTGCACGTCGTTCCGGGCTCGCTACATCTGCCGACAGAGCCTGGGCACACCAGTGACACCAGAGTTGCCTGGCCCAGACCCCACACCCAGCCTCACTGGCTCCTGTCCCCAGGGCTGGGTCTCAGACCCCAAACTCCGACACTGCTATAAG
Seq C2 exon
GTGTTTAGCTCAGAGCGGCTGCAGGAGAAGAAGAGTTGGATCGAGGCCCTCGGGGTTTGCCGGGAGTTGGGGGCCCAGCTGCTGAGTCTGGCCAGCTATGAGGAGGAACATTTTGTGGCCAACATGCTCAACAAGATCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006548_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.192 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(16.7=50.0)
A:
PF0005916=Lectin_C=PD(31.2=46.6)
C2:
PF0005916=Lectin_C=PU(33.1=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGACGCTGGAATGACAGT
R:
TCTTGTTGAGCATGTTGGCCA
Band lengths:
244-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]