DreEX6016109 @ danRer10
Exon Skipping
Gene
ENSDARG00000078135 | MRC2
Description
mannose receptor, C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr3:19637733-19642116:+
Coord C1 exon
chr3:19637733-19637881
Coord A exon
chr3:19640077-19640294
Coord C2 exon
chr3:19641974-19642116
Length
218 bp
Sequences
Splice sites
3' ss Seq
GTGCTAATGGTGATGTGCAGCGC
3' ss Score
2.87
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GTTTGAGCAGGCGTTTGTGAGCAGTCTGGTGTTTGGACGAACTGATGATCAGTTTTGGCTTGGCCTTAATAACGAAAACAGCTCCGGCACATTTGGCTGGATAACCGGAGATGAGCTCACATACACCAACTGGAACAGAGACCAGCCAG
Seq A exon
CGCAGGTAAAGGGTGGCTGTGTGGTGATGGTGGCGGGTCAGGCTATGGGCCTGTGGGAGGTGAAGGACTGTGCCAGCATTCGCTCCAAATACATCTGCAAACAGAATCAGGGCTCATCTTCCATTCCCAGTCCTCCTGCGCCTGTGCCTACACCCTCCCTGACCGGATCATGTCCTTCAGGGTGGAAAAGCAGCAACTCGTTCAGGCACTGCTACAAG
Seq C2 exon
GTTTTTCATGCAGGTGCACTGGAAAAGAGGCTGACGTGGATTCAAGCACACAAGTTTTGCCAGAAACACGGAGCTCAGCTGGCCAGTTTCAGCACACCGGAGGAGGAGGCCTTCGTCTTCCAGATCCTCCACGAGGCCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078135-'10-17,'10-13,11-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.205 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(45.9=100)
A:
PF0005916=Lectin_C=PD(31.2=46.6)
C2:
PF0005916=Lectin_C=PU(35.5=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGAGCAGGCGTTTGTGAG
R:
CTCGTGGAGGATCTGGAAGAC
Band lengths:
284-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]