BtaEX6089497 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48286305-48321220:+
Coord C1 exon
chr19:48286305-48286568
Coord A exon
chr19:48298571-48298696
Coord C2 exon
chr19:48320939-48321220
Length
126 bp
Sequences
Splice sites
3' ss Seq
AAGCTCTTCTGTCTTATCAGCCA
3' ss Score
4.02
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
Exon sequences
Seq C1 exon
CTACCTTGACAAGCTATTCTGAAAACATGGAACGCACAAAATATGTTGGGGAAAGCAGTAAAGACTTAGGATCTGGAGGAAACCTAAAGCCTTGGCAGTCTCAAAAATCCAGCATGGATTCCTGTTTGTATCGAGTAGATGAAAACATGACGGCATCCACCTACAGTCTGAATAAGATACCAGAGAGGAATTTGGAAACCGTTTTATCACAATCAGTACAGTCTATTCCTCTTTATCTTATGCCACGGCCAAACTCAGTAGCAG
Seq A exon
CCACAAGCTCTGCCCACTTGGAGGACCTCGCTTACCTGGATGAACAGAGACATACCCCTTTGAGAACTTCTCTTCGAATGCCAAGACAGAGCATGGCCGGTGCTCGCACGCAACAGGATTTAAGAG
Seq C2 exon
TCCGCTTTGCACCTTACAGACCTCCCGATATCTCCCTGAAGCCCCTGCTCTTTGAAGTGCCCAGCATCACTACGGAGTCGGTGTTCGTTGGTCGGGATTGGGTTTTCCATGAAATAGATGCTCAGCTTCAAAGTTCAAACGCCAGCGTGAACCAGGGAGTCGTGATCGTGGGAAACATTGGGTTCGGCAAAACTGCCATCATTTCCAGACTGGTGGCCCTCAGCTGCCACGGAACACGGATGAGACAAATCGCCTCTGACAGCCCACACGCCTCCCCCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249-'10-10,'10-8,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=0.372 C2=0.137
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131911=AAA_16=PU(31.2=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTATGCCACGGCCAAACTC
R:
GGCCACCAGTCTGGAAATGAT
Band lengths:
247-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]