GgaEX0000408 @ galGal3
Exon Skipping
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2480144-2496519:+
Coord C1 exon
chr27:2480144-2480407
Coord A exon
chr27:2487163-2487288
Coord C2 exon
chr27:2496238-2496519
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGCTCTGCTCTCTCCGGCAGCCA
3' ss Score
7.99
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CCACTTTGACGAGCTACTCCGAGAACGTGGAGCGCACGAAGTATGGAGGGGAAAGCAGCAAGGAGATGGGCTCGGGAGGCAACCTGAAGCCCTGGCAGTCCCAGAAGTCCAGCATGGACTCGTGTCTGTACCGCGTGGATGAGAACATGACGGCGTCCACCTACAGCCTGAACAAGATCCCGGAGAGGAACCTGGAGACCGTCCTGTCCCAGTCGGTGCAGTCCATCCCGCTGTACCTCATGCCACGGCCCAACTCGGTCGCAG
Seq A exon
CCACCAGCTCGGCCCACCTGGAGGACCTGGCATACCTGGACGAGCAGCGGCACACCCCCCTGCGCACCTCCCTCCGCATGCCCCGGCAGAGCGTGGCCGGAGCCCGCACACAGCAGGACCTGCGAG
Seq C2 exon
TGCGCTTTGCACCCTACCGACCTCCGGACATCTCCCTGAAGCCGCTGCTCTTCGAGGTCCCCAGCATCACCACCGAGTCCGTCTTCGTGGGCCGGGATTGGGTGTTCCATGAGATCGACGCGCAGCTGCAGAGCTCCAACGCCAGCGTGAACCGCGGGGTGGTGATCGTGGGGAACATCGGCTTTGGGAAGACCGCCATCATCTCCAGGCTGGTTGCGCTCAGCTGCCACGGCACTCGCATGAGGCAGATCGCATCCGACAGCCCGCACGCCTCGCCCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478_CASSETTE4
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=0.194 C2=0.137
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131911=AAA_16=PU(31.2=70.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCCCGCTGTACCTCATG
R:
ATGATGGCGGTCTTCCCAAAG
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]