RnoEX0088538 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:93996322-94029525:+
Coord C1 exon
chr10:93996322-93996585
Coord A exon
chr10:94011814-94011939
Coord C2 exon
chr10:94029244-94029525
Length
126 bp
Sequences
Splice sites
3' ss Seq
AATCCTTTCTGTCTTGGCAGCCA
3' ss Score
8.03
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
CAACATTAACAAATTATTCTGAAAACATGGAGCGAACAAAATATGTTGGGGAAGCCGGTAAAGAATTGGGCTCTGGAGGAAATCTAAAACCATGGCAGTCTCAAAAATCCAGCATGGACTCCTGTCTGTACCGAGTGGATGAAAACATGGCTGCATCCACATACAGTCTGAACAAGATCCCGGAGCGGAATCTAGAAACAGTTTTATCACAGTCTGTACAGTCTATTCCTTTGTATCTCATGCCTCGGCCAAATTCTGTAGCAG
Seq A exon
CCACCAGTTCTGCCCACTTGGAGGACCTTGCTTACCTGGATGAGCAGAGACATACTCCTTTGAGGACGTCTCTTCGAATGCCAAGACAGAGCATGAGTGGTGCTCGCACACAGCAGGATCTCAGAG
Seq C2 exon
TTCGATTTGCACCTTACAGACCTCCAGATATCTCCCTGAAGCCCCTCCTCTTTGAAGTGCCCAGCATTACCACAGAGTCAGTGTTTGTTGGCCGAGATTGGGTATTCCATGAGATCGATGCTCAGCTGCAGAGTTCCAATGCCAGCGTGAACCAAGGAGTAGTGATTGTGGGAAACATTGGGTTTGGCAAAACTGCCATCATCTCCAGACTGGTGGCCCTCAGCTGCCATGGTACACGGATGAGACAGATCGCCTCTGATAGCCCACACGCCTCCCCTAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840-'21-24,'21-21,24-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=0.419 C2=0.137
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131911=AAA_16=PU(31.6=70.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCATGCCTCGGCCAAATTC
R:
ACCAGTCTGGAGATGATGGCA
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]