MmuEX6090458 @ mm10
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105798561-105835230:+
Coord C1 exon
chr11:105798561-105798824
Coord A exon
chr11:105810472-105810597
Coord C2 exon
chr11:105834949-105835230
Length
126 bp
Sequences
Splice sites
3' ss Seq
AATTCTTTCTGTCCTGTTAGCCA
3' ss Score
5.47
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
CAACATTAACAAATTATTCTGAAAACATGGAGCGAACAAAATATGTTGGAGAAGGCAGTAAAGAATTAGGATCTGGAGGAAACCTAAAACCATGGCAGTCTCAAAAATCCAGCATGGACTCTTGTCTGTACCGAGTGGATGAAAACATGGCTGCATCCACATACAGTCTGAACAAGATCCCGGAGCGAAATCTGGAAACAGTTTTATCGCAATCAGTACAGTCTATTCCGTTGTATCTCATGCCTCGGCCAAATTCTGTAGCAG
Seq A exon
CCACCAGCTCTGCCCACTTGGAGGATCTTGCTTACCTGGATGAGCAGAGACACACTCCTTTGAGGACATCCCTTAGAATGCCAAGACAGAGCCTGAGTGGTGCTCGAACACAGCAGGATCTCAGAG
Seq C2 exon
TTCGCTTTGCACCTTACAGACCTCCAGACATCTCCTTGAAGCCCCTACTCTTCGAAGTGCCCAGCATTACCACGGAGTCAGTGTTTGTTGGTCGAGATTGGGTATTCCATGAGATTGATGCTCAGCTTCAGAGTTCTAATGCCAGCGTGAACCAAGGAGTAGTGATTGTGGGAAACATTGGGTTCGGCAAAACTGCCATCATCTCCAGACTGGTGGCCCTCAGCTGCCATGGTACACGGATGAGACAGATCGCCTCTGACAGCCCACACGCCTCCCCCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-'19-30,'19-24,21-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=0.500 C2=0.106
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131911=AAA_16=PU(31.3=70.5)
Main Skipping Isoform:
ENSMUST00000100330fB17858
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCATGCCTCGGCCAAATTC
R:
ACCAGTCTGGAGATGATGGCA
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types