MmuEX6090458 @ mm9
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105659875-105696544:+
Coord C1 exon
chr11:105659875-105660138
Coord A exon
chr11:105671786-105671911
Coord C2 exon
chr11:105696263-105696544
Length
126 bp
Sequences
Splice sites
3' ss Seq
AATTCTTTCTGTCCTGTTAGCCA
3' ss Score
5.47
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
CAACATTAACAAATTATTCTGAAAACATGGAGCGAACAAAATATGTTGGAGAAGGCAGTAAAGAATTAGGATCTGGAGGAAACCTAAAACCATGGCAGTCTCAAAAATCCAGCATGGACTCTTGTCTGTACCGAGTGGATGAAAACATGGCTGCATCCACATACAGTCTGAACAAGATCCCGGAGCGAAATCTGGAAACAGTTTTATCGCAATCAGTACAGTCTATTCCGTTGTATCTCATGCCTCGGCCAAATTCTGTAGCAG
Seq A exon
CCACCAGCTCTGCCCACTTGGAGGATCTTGCTTACCTGGATGAGCAGAGACACACTCCTTTGAGGACATCCCTTAGAATGCCAAGACAGAGCCTGAGTGGTGCTCGAACACAGCAGGATCTCAGAG
Seq C2 exon
TTCGCTTTGCACCTTACAGACCTCCAGACATCTCCTTGAAGCCCCTACTCTTCGAAGTGCCCAGCATTACCACGGAGTCAGTGTTTGTTGGTCGAGATTGGGTATTCCATGAGATTGATGCTCAGCTTCAGAGTTCTAATGCCAGCGTGAACCAAGGAGTAGTGATTGTGGGAAACATTGGGTTCGGCAAAACTGCCATCATCTCCAGACTGGTGGCCCTCAGCTGCCATGGTACACGGATGAGACAGATCGCCTCTGACAGCCCACACGCCTCCCCCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=0.302 C2=0.137
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131911=AAA_16=PU(30.3=70.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCATGCCTCGGCCAAATTC
R:
ACCAGTCTGGAGATGATGGCA
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: