BtaEX6089649 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004770 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr19:48800552-48801622:-
Coord C1 exon
chr19:48801468-48801622
Coord A exon
chr19:48800776-48800949
Coord C2 exon
chr19:48800552-48800674
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCGCCTGCTGGTGCCCCCAGGCC
3' ss Score
8.72
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCTGCGTGCAGCGCTTTCCCTTCCTCTACGTGGACATCTCCCAGGGTCGAGGGAAGAAGTGGTGGACCCTCCGCAGGGCCTGCTTCAAGATCGTTGAGCACAACTGGTTTGAGACCTTCATTGTCTTCATGATCCTGCTCAGCAGTGGGGCCTTG
Seq A exon
GCCTTCGAGGACATCCACATTGAGCAGCGGCGAGTCATCCGCACCATCCTGGAGTACGCCGACAAGGTCTTCACCTACATCTTCATCCTGGAGATGCTACTCAAGTGGGTGGCCTACGGCTTCAAGGTGTACTTCACCAATGCCTGGTGCTGGCTCGACTTCCTCATCGTGGAC
Seq C2 exon
GTCTCCATCATCAGCCTGGTGGCCAACTGGCTGGGCTACTCGGAGCTGGGACCCATCAAATCCCTGCGGACGCTGCGGGCCCTGCGCCCCCTGAGGGCACTGTCTCGATTCGAGGGCATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004770-'16-19,'16-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=PD(19.2=84.6)
A:
PF0052026=Ion_trans=PU(17.1=67.2)
C2:
PF0052026=Ion_trans=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGCTTTCCCTTCCTCTAC
R:
GAATCGAGACAGTGCCCTCAG
Band lengths:
258-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]