GgaEX6027196 @ galGal4
Exon Skipping
Gene
ENSGALG00000000252 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr27:1635483-1636727:-
Coord C1 exon
chr27:1636573-1636727
Coord A exon
chr27:1636119-1636292
Coord C2 exon
chr27:1635483-1635605
Length
174 bp
Sequences
Splice sites
3' ss Seq
TAGCTCCACATCTCTTCCAGGCT
3' ss Score
5.65
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCTGCGTCAAGAGGTTTCCCTGTCTCCACGTGGACATCACCAGTGACAGAGGGAAGATCTGGTGGAACATTCGTAAAACCTGCTTCCTCATCGTGGAGCACGACTGGTTTGAGACCTTCATCGTCTTCATGATCCTCCTCAGCAGCGGGGCGCTG
Seq A exon
GCTTTTGAGGACATCTACATAGAGCAGCGGAAGGTGATCCGCACCATCCTGGAGTATGCTGATAAGGTCTTCTCCTACATCTTCGTCATTGAGATGCTGCTCAAGTGGGTGGCCTATGGCTTCAAGGTGTACTTCACCAACGCGTGGTGCTGGCTGGACTTCCTCATCGTCGAT
Seq C2 exon
GTCTCCCTCATCAGCCTGACAGCCAACTGGTTGGGATACTCCGAGCTGGGAGCCATCAAATCCCTGCGGACACTGAGAGCACTGAGACCTCTGCGTGCCCTGTCCAGATTTGAAGGCATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000252-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=PD(21.2=84.6)
A:
PF0052026=Ion_trans=PU(17.1=67.2)
C2:
PF0052026=Ion_trans=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGGACATCACCAGTGAC
R:
TTCAAATCTGGACAGGGCACG
Band lengths:
243-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]