DmeEX6002881 @ dm6

Exon Skipping

Gene

FBgn0264255 | para

Description

NA

Coordinates

chrX:16477449-16483033:-

Coord C1 exon

chrX:16482626-16483033

Coord A exon

chrX:16481326-16481499

Coord C2 exon

chrX:16477449-16477571

Length

174 bp

Sequences

Splice sites

3' ss Seq

ACCTCTTCGAACTGGAACAGGCA

3' ss Score

4.44

5' ss Seq

ATGGTAAGT

5' ss Score

11.01

Exon sequences

Seq C1 exon

GACGACGACACTGCCAGCATTAACTCATATGGTAGCCATAAGAATCGACCATTCAAGGACGAGAGCCACAAGGGCAGCGCCGAGACGATGGAGGGCGAGGAGAAGCGCGACGCCAGCAAGGAGGATTTAGGTCTCGACGAGGAACTGGACGAGGAGGGCGAATGCGAGGAGGGCCCGCTCGACGGTGATATCATTATTCATGCACACGACGAGGATATACTCGATGAATATCCAGCTGATTGCTGCCCCGATTCGTACTATAAGAAATTTCCGATCTTAGCCGGTGACGATGACTCGCCGTTCTGGCAAGGATGGGGCAATTTACGACTGAAAACTTTTCAATTAATTGAAAATAAATATTTTGAAACAGCTGTTATCACTATGATTTTAATGAGTAGCTTAGCTTTG

Seq A exon

GCATTAGAAGATGTACATCTGCCACAAAGACCCATACTGCAGGATATTTTATACTATATGGACAGAATATTTACGGTTATATTCTTCTTGGAAATGTTAATCAAGTGGTTGGCGCTCGGCTTCAAAGTGTACTTCACCAACGCGTGGTGTTGGCTCGATTTCGTGATTGTCATG

Seq C2 exon

GTATCGCTTATCAACTTCGTTGCTTCACTTGTTGGAGCTGGTGGTATTCAAGCCTTCAAGACTATGCGAACGTTAAGAGCACTGAGACCACTACGTGCCATGTCCCGTATGCAGGGCATGAGG

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0264255-'33-38,'33-36,34-38=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.438 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF065128=Na_trans_assoc=PD(49.6=94.1)

A:

PF065128=Na_trans_assoc=PD(38.7=49.2)

C2:

PF0052026=Ion_trans=FE(17.9=100)

Main Inclusion Isoform:

FBpp0303597

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

FBpp0074073, FBpp0110321, FBpp0110322, FBpp0288560, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292675, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292685, FBpp0292686, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292697, FBpp0292698, FBpp0292699, FBpp0292700, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292707, FBpp0292708, FBpp0292709, FBpp0292710, FBpp0292712, FBpp0292713, FBpp0292714, FBpp0292715, FBpp0292716, FBpp0292717, FBpp0292718, FBpp0292719, FBpp0292720, FBpp0292721, FBpp0292723, FBpp0309614, FBpp0311217

Other Skipping Isoforms:

NA

Associated events

Conservation

Human

(hg38)

chr2:166012109-166012282

HIGH PSI

HsaEX6016410

(SCN1A)

Human

(hg19)