DreEX6067607 @ danRer10
Exon Skipping
Gene
ENSDARG00000098738 | scn4aa
Description
sodium channel, voltage-gated, type IV, alpha, a [Source:ZFIN;Acc:ZDB-GENE-051201-2]
Coordinates
chr12:4851943-4852580:+
Coord C1 exon
chr12:4851943-4852097
Coord A exon
chr12:4852185-4852358
Coord C2 exon
chr12:4852458-4852580
Length
174 bp
Sequences
Splice sites
3' ss Seq
CAATCTTTTCTCTTTGCCAGGCT
3' ss Score
7.51
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCTGTATTAGGCGATGTGCATGTTTGAGTGTTGACATCACAGAAGGATGGGGTAAAAAATGGTGGAACCTCAGAAGGACATGCTTCACCATCGTTGAGCATGATTACTTTGAGACCTTCATCATCTTTATGATCCTCCTTAGCAGTGGAGCACTG
Seq A exon
GCTTTTGAGGATATCAACATTGAGAGGCGCAGAGTGATCAAGACCATTCTGGAGTATGCTGATAAAGTCTTTACATATATTTTTATAGTGGAGATGTTACTGAAGTGGGTGGCATATGGCTTCAAGACCTACTTCACTAATGCATGGTGCTGGCTGGACTTCCTCATTGTGGAT
Seq C2 exon
GTGTCTCTGGTCAGTTTAACGGCTAATTTAATGGGCTACTCTGAGCTGGGGGCAATCAAATCTCTCAGGACACTTAGAGCTCTTCGTCCACTTCGAGCCCTATCCAGATTTGAAGGAATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098738-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=PD(23.4=84.6)
A:
PF0052026=Ion_trans=PU(17.1=67.2)
C2:
PF0052026=Ion_trans=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATGTGCATGTTTGAGTGT
R:
CTGGATAGGGCTCGAAGTGGA
Band lengths:
252-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]