RnoEX6050163 @ rn6
Exon Skipping
Gene
ENSRNOG00000012134 | Scn4a
Description
sodium voltage-gated channel alpha subunit 4 [Source:RGD Symbol;Acc:3636]
Coordinates
chr10:94513494-94515985:-
Coord C1 exon
chr10:94515831-94515985
Coord A exon
chr10:94514057-94514230
Coord C2 exon
chr10:94513494-94513616
Length
174 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGCTGGTGTCCCCAGGCC
3' ss Score
9.58
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCTGTGTGAAGCGCTGCCCCTGCCTCTATGTGGACATCTCCCAGGGCCGTGGGAAAATGTGGTGGACACTGCGCAGGGCCTGTTTCAAGATTGTTGAGCACAACTGGTTTGAGACCTTCATTGTCTTCATGATCTTGCTCAGCAGTGGAGCCCTG
Seq A exon
GCCTTCGAAGACATCTACATTGAACAGCGACGAGTCATCCGCACCATCCTGGAATACGCCGACAAGGTCTTCACCTACATCTTCATCCTGGAGATGTTGCTAAAGTGGGTCGCCTACGGCTTCAAGGTGTATTTCACCAATGCCTGGTGCTGGCTCGACTTCCTCATCGTGGAC
Seq C2 exon
GTCTCCATCATCAGCCTGGTGGCAAACTGGCTGGGCTACTCTGAGCTGGGGCCCATCAAATCCCTGCGCACACTCCGGGCCCTGCGACCTCTGAGGGCACTGTCTCGATTTGAGGGTATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012134-'24-22,'24-21,25-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=PD(19.6=84.6)
A:
PF0052026=Ion_trans=PU(17.1=67.2)
C2:
PF0052026=Ion_trans=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTGGACATCTCCCAGGGC
R:
CCTCAAATCGAGACAGTGCCC
Band lengths:
244-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]